Try Testcode or Codonpreference in GCG. I have found them to be very good
using Leishmania genomic DNA, but it doesn't have any introns. Should be
OK using ESTs.
Good luck
Peter
--
=====================================================
Peter J. Myler
Seattle Biomedical Research Institute
4 Nickerson Street
Seattle, WA 98109-1651
phone: (206) 284-8846x332
FAX: (206) 284-0313
e-mail: MYLERPJ at U.WASHINGTON.EDU
=====================================================
Tim Bolling 7-2290 4MD <bollingt at ugene1.abbott.com> wrote in article
<327A2981.5062 at ugene1.pprd.abbott.com>...
> Can anyone suggest a good ORF prediction program that runs on UNIX?
> I am interested in one that would predict the MOST likely reading
> frame in an EST (not just all orf that start with a MET and end with
> a termination codon and are of a particular size). Thanks for any
> suggestions.
>> Tim Bolling
>bollingt at ugene1.pprd.abbott.com>-------------- next part --------------
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