freeware that does contig assembly (via CAP) and restrict enzyme
mapping includes seqpup, which also does run on any platform.
Caveats apply that this is a work in progress and people may
run into bugs that make it not as useful as it could be. I hope
to have a bug-reduced release out in the next month.
-- d.gilbert--biocomputing--indiana u--bloomington--gilbertd at bio.indiana.edu