Loop analysis software?

Dan Gebow dgebow at hsph.harvard.edu
Tue Jun 11 12:54:20 EST 1996

Does anyone know of any shareware out there that will analyze the 
stability of DNA loop structures (i.e. up 40 bp). Specifically I am 
looking for imperfect palindrome analysis. I need output in terms of 
stability (dG, Tm) and hopefully graphical representation.

Current primer analysis programs don't seem to recognize imperfect 
palindromes that are known to form loops (i.e. 1 bp mismatch).


dgebow at hsph.harvard.edu

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