Dan Gebow (dgebow at hsph.harvard.edu) wrote:
: Does anyone know of any public domain software that will tell the amount
: of homolgy between two DNA sequences (no greater than 1 KB) and where
: the homology is?
There are, in scientific terms, several oodles of such programs :-)
You should consult EBI's BioCatalog for pointers to the code,
and SeqAnalRef for the literature on how to use them.
Bounce off
http://golgi.harvard.edu/htbin/biopages?biocat|seqanal
Good luck!
Keith Robison
Harvard University
Department of Molecular & Cellular Biology
Department of Genetics
robison at mito.harvard.edu
