IUBio

protein alignment display

A. John Watson watson_j at bms.com
Sat Feb 24 12:41:52 EST 1996


In article <4g2gc0$1emc at bigblue.oit.unc.edu>, ewb at med.unc.edu (Edward W.
Baptist) wrote:

> Is there a program which will take a protein alignment (such as a GCG msf
> file) and display all amino acids which match either a particular sequence
> or a consensus sequence and display those  as either dots or dashes while
> printing out only the ones that differ?
> Ed Baptist
> Lineberger Comprehensive Cancer Center
> UNC

MegAlign from DNAStar (608.258.7420) does that.  Not cheaply, though.

Cheers,

AJW

----------------
John Watson
Bristol-Myers Squibb Co.
watson_j at bms.com
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