In article <4g2gc0$1emc at bigblue.oit.unc.edu>, ewb at med.unc.edu (Edward W.
Baptist) wrote:
>Is there a program which will take a protein alignment (such as a GCG msf
>file) and display all amino acids which match either a particular sequence
>or a consensus sequence and display those as either dots or dashes while
>printing out only the ones that differ?
Also, readseq will do this. In addition, it is a useful utility for
transferring sequences from one format to another. It is available for a
number of computer platforms (see
ftp://ftp.bio.indiana.edu/molbio/readseq).
_____
Jerry Learn
Research Associate
Dept. of Microbiology | Learn at u.washington.edu
University of Washington | Phone: (206) 616-4286
Box 357740 | FAX: (206) 616-1575
Seattle, WA 98195-7740 USA | or (206) 543-8297
