In article <4g2gc0$1emc at bigblue.oit.unc.edu>, ewb at med.unc.edu (Edward W.
>Is there a program which will take a protein alignment (such as a GCG msf
>file) and display all amino acids which match either a particular sequence
>or a consensus sequence and display those as either dots or dashes while
>printing out only the ones that differ?
Also, readseq will do this. In addition, it is a useful utility for
transferring sequences from one format to another. It is available for a
number of computer platforms (see
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