protein alignment display

Edward W. Baptist ewb at med.unc.edu
Fri Feb 16 12:54:08 EST 1996

Is there a program which will take a protein alignment (such as a GCG msf
file) and display all amino acids which match either a particular sequence
or a consensus sequence and display those  as either dots or dashes while
printing out only the ones that differ?
Ed Baptist
Lineberger Comprehensive Cancer Center

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