In article <32AD9FB3.5F9E at becker.biosci.arizona.edu>,
John Calley <jnc at becker.biosci.arizona.edu> writes:
> Ideally I'd like to have a program take both
>secondary structure and primary structure into consideration in doing an
>alignment but I'd settle for just secondary structure. Does anyone
>have any suggesions?
ClustalW can do that (Profile and structure alignments). See :
http://www-igbmc/BioInfo/ClustalW/clustalwOLH.html
or http://www.u.arizona.edu/~schluter/ClustalW/index.html (the mirror
should be faster for you).
hope this helps,
Francois.
--
Francois Jeanmougin
Service de bioinformatique / bioinformatics service
IGBMC BP 163 67404 Illkirch France
tel :(France) 03 88 65 32 71 / (international) (+33) 3 88 65 32 71
e-mail : jeanmougin at igbmc.u-strasbg.fr
"C'est pas parcequ'on monte au banc, qu'il faut descendre a jeun." (Thiefaine)
