IUBio

Sequence alignment documentation

Ken Baker ken.baker at bbsrc.ac.uk
Fri Aug 23 05:15:23 EST 1996


In article <2016.9608152141 at dse>, o.gallay at ic.ac.uk wrote:

> Hi.
> Does anyone out there know of a program that will draw a frame around 
> homologous segments of sequence in alignments, ie. like "prettybox" but 
> without the shading?  I've often seen this sort of frame in publications, but 
> everyone I know thinks this has to be done by hand.  
> Please e-mail as well as post!
> 
> Oliver Gallay
> Biochemistry Department
> Imperial College
> London SW7 2AY
> UK
> Tel. +44-171-5895111 x55202
> Fax. +44-171-5945255

If you've got access to a Macintosh, Seqvu is rather good: it's at
<ftp://sunsite.doc.ic.ac.uk//extra/computing/systems/mac/Collections/
  umich/misc/molbio/seqvu1.0.sit.hqx.gz>

or your favourite umich mirror.
--
Dr Ken Baker                                  Internet: ken.baker at bbsrc.ac.uk
B.I.T.S.
BBSRC Computing Centre                    BritishTelecomnet: (+44)1582 762271
West Common                                          Faxnet: (+44)1582 761710
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