Snippets of C code [was Re: Sequence Aligment]

Jared Roach roach at u.washington.edu
Mon Aug 12 21:57:32 EST 1996

	This makes three requests for C code for some simple molecular 
biology applications to this newsgroup recently.  It would be my 
hope that better programmers than I respond to these threads.  
The only reason to date that I have dared post my horrible code 
was to provide some, rather than no, response from the community.  
Anyway, to stop wasting bandwidth by posting code, I stuck it on 
my website at 


	I hope this helps.  For what it's worth, there are a couple of 
dynamic alignment algorithms there.  They're both local alignments, 
but if you need global alignments all you have to do is take the 
zero out of the comparison and make sure that the zeroth row and 
column are initialized with the right gap penalties.

Jared C. Roach
Department of Molecular Biotechnology
Health Sciences Building, Room K354
University of Washington
Box 357730
Seattle, WA 98195
phone  (206) 616-4536
FAX    (206) 685-7301
roach at u.washington.edu

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