Greg Schaefer (gregs at u.washington.edu) wrote:
: Hello,
: Is anyone familiar with a program that can predict the structure of
: closely related proteins based on the known structure of one of the family
: members?
Yeah, what about Promod (check out :http://www-isrec.unil.ch/PROMOD.html)
There is also a web interface to this program somewhere too.
COMPOSER was written at Birbeck college (UK) and they used to allow access
to the first-generation version (non-commercial, it's now part of the
BioSym SYBYL modelling package).
Also, some guy at Rockefeller wrote a similar type of package (sorry,
can't be more specific).
Also, most all major commercial molecular modelling packages now have
modelling-by-homology modules
Hope this helps
