In article <JUN.96Mar29114706 at crick.nih.go.jp> Jun Ishikawa,
jun at nih.go.jp writes:
>> ClustalW can write GCG's MSF format. Please check the following WWW
page:
>>I know that. But I have already aligned 8000 bp x 20 seqs.,
>which took me about a week to get the result. So, I would like
>to convert it to MSF.
hello,
easy way to do that :
run clustalw
use profile alignment
input your clustal alignment as profile
input 1 of the aligned sequences as sequence input (change the name
before !!!)
go to output format options, and toggle on gcg format
run the profile alignement (less than 5 minutes I hope)
then you have a .msf file with 1 sequence duplicated, you can remove with
lineup.
That's all folks,
Francois.
Francois Jeanmougin
Bioinformatic service
IGBMC Strasbourg France
