Xiaoqui Huang's contig assembly program (CAP) may be of some help
to you. Find it at ftp://cs.mtu.edu/pub/huang/CAP.tar.Z
You will also find it as a child application that can be run from
some publicly available sequence editors like
SeqApp (mac), ftp://iubio.bio.indiana.edu/molbio/seqapp/
SeqPup (most computer systems) ftp://iubio.bio.indiana.edu/molbio/seqpup/
GDE (sun and other unix) ftp://iubio.bio.indiana.edu/unix/GDE/
CONTIG ASSEMBLY PROGRAM (CAP)
copyright (c) 1991 Xiaoqiu Huang
The distribution of the program is granted provided no charge
is made and the copyright notice is included.
Proper attribution of the author as the source of the software
would be appreciated:
"A Contig Assembly Program Based on Sensitive Detection of
Fragment Overlaps" (submitted to Genomics, 1991)
Xiaoqiu Huang
Department of Computer Science
Michigan Technological University
Houghton, MI 49931
E-mail: huang at cs.mtu.edu
--
-- d.gilbert--biocomputing--indiana u--bloomington--gilbertd at bio.indiana.edu
