Hi netters
I am hoping that somebody out there can help me.
What I want to do is search all 6 possible orfs of specific sequences
with a very short peptide sequence (6 - 10 aa in length). The specific
sequences are the complete sequences of human herpesviruses, each one is
>150,000 bp in size.
If I send to a server to do a BLAST/FASTA search of the EMBL or GenBank
databases I will probably have to sift through lots of irrelevant
matches.
Anybody out there got a solution.
Many thanks
Mick
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Mick Jones Tel: 081-740-3328 (+44-81-740-3328)
Department of Virology FAX: 081-743-8331 (+44-81-743-8331)
RPMS, Du Cane Road Email: mjones at rpms.ac.uk
London, W12 0NN, UK URL: http://www.rpms.ac.uk/rpms_home.html
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"Smoke me a kipper, I'll be back for breakfast." Ace Rimmer (Red
Dwarf)
"Crackin' bit of toast, Gromit." Wallace (The Wrong Trousers)
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