Dr. J.P. Clewley (jclewley at hgmp.mrc.ac.uk) wrote:
: >>I,m looking for software to do the secondary structure of 23SrDNA for
: more then 2000 bp.
: I think MacDNASIS (Hitachi) will do this.
: Jon Clewley
MuFold by Michael Zuker Runs on Unix platforms (and Crays) and will do this,
but there is a small coding change to increase the size, but you need to
recompile (it is like 2 lines that were changed). Vienna RNA can do this also.
Let me know if you have questions.
Mark Dalton CH3-S-CH2 H H O H
Cray Research,Inc. | | | \ |
Los Alamos,NM 87544 CH2-C-COO //\ ---C--CH2-C-COO C-CH2-C-COO
mwd at cray.com | | || || | // |
NH3 \\/ \ / CH NH3 O NH3
URL = http://lenti.med.umn.edu/~mwd/mwd.html