Hello out there!
I have cloned an viral DNA element, approximately 600bp in length, that
reputedly yields a transcript chock full of secondary structure. Is there any
software available out there that will help predict secondary structure in
RNA? I have generated by hand a general drawing, but I would like some
confirmation. Many of the long stretches of sense/antisense association
regions that I predicted are made up of series of very short segments (~5bp)
of associations, broken by a few bases on either strand.
Any help would be appreciated!
Jose E. N. Gonzales
p.s. Replies may be posted here or mailed directly to me at: JOSEGONZ at IMNR.COM