Deletion breakpoint analysis?

Sandy Dickin Zoology sd1 at mole.bio.cam.ac.uk
Mon Nov 6 09:07:46 EST 1995

I am looking for software (for any platform, but preferably Unix or
Macintosh), which will help me locate the endpoints of deletions in
plasmids.  I have sequenced these endpoints, and I wish to find their
location in the original plasmid sequence.

I have tried this using various programs; staden (fasta, gap and
bestfit), and gcg.  These only seem capable of finding the first
breakpoint, not the second.  Am I doing something wrong, or is there a
specific program available that could help me in my quest?

Thanks for any and all help!


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