Sequences Similar or Chance?

Mary Berbee berbee at unixg.ubc.ca
Sat Jan 21 19:09:30 EST 1995

We are looking for a program to tell us if two sequences are likely to be
similar by chance or by homology.  I assume there would be a method by
randomly shuffling the bases (ie, keeping the base ratio the same but
randomizing their order, then comparing the percent remaining the same
when aligned).

Any suggestions on this will be greatly appreciated!

Dave Carmean  carmean at sfu.ca
Mary Berbee  berbee at unixg.ubc.ca

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