R. Doelz writes:
>>SRS can extract CDS from entire sequende databases and combine, map, filter
>with whatever database or database query you want (currently, > 50 databases.
>Check out http://www.ch.embnet.org/srs/status.html for reference).
>
Reinhardt, this is quite true! However: is SRS able to use the JOIN
feature?
Last time I used it for this purpose, SRS extracted correctly all the CDS
but created one entry for each CDS.
As I understand it, the problem here is to JOIN all the exons of one given
gene into one single sequence ("cDNA"). Hence my previous answer about
ACNUC.
If SRS can do this, I would be VERY interested to learn the trick!
Regards,
Jean-Loup
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Jean-Loup Risler Tel: (33 1) 69 82 31 34
CNRS Fax: (33 1) 69 07 49 73
Centre de Genetique Moleculaire Email: risler at cgmvax.cgm.cnrs-gif.fr
91198 Gif sur Yvette Cedex France
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