In article <3hmb7u$eic at crcnis3.unl.edu>,
vitor warwar <vwarwar at unlinfo.unl.edu> wrote:
> I have a file with app. 50 protein sequences in the Fasta
>format. I would like to reformat that to GCG format. Does anybody
>know how to to that?
If the fasta file is called xxx.fasta you can do this:
fromfasta xxx.fasta
That will give you all 50 sequences in separate files. If you want
them into a GCG datalib and there is nothing else in the directory but
the 50 sequences you can then use dataset.
I generally just emacs the file into the PIR format that GCG likes.
Then I use dbindex once I've created the .seq and .ref files.
Mike
