Franz Torres Barbosa (infomed!ICT.SLD.CU!FRANZ at GN.APC.ORG) wrote:
: Hello netters :
:: I'm a computer programmer and I just began in a new job(related
: with biotechnology proceses) . I have to automate, like first task,
: a laboratory which test the DNA of the monoclonal antibodies
: released. It use differents techniques such as : Hybridisation,
: PCR, DotBlot, InmunoBlot. It also tests virusses of mice.
:: I would like to know if anybody have an idea or references to
: existing computer programs related with this subject. Or any
: mathematical approach or algorithm. If you can send me a file with
: help I'll be very glad.
:
Here is a clip from a search through the BioCatalogue for MolBio
software, maintained at the EMBL outstation - EBI.
The BioCatalogue is accessible through WWW at:
http://www.ebi.ac.uk under "Documentation and software"
or through gopher:
gopher.ebi.ac.uk
Hope it helps,
Benny Shomer.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Benny Shomer
External Biological Liasion Officer,
EMBL outstation - The EBI,
Hinxton Hall, Hinxton,Cambridge CB10 1RQ, UK
Tel: +44-223-494437
Fax: +44-223-494468
Email: bshomer at EBI.ac.ukhttp://www.ebi.ac.uk/ebi_docs/staff/benny.html
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NAME MOLBIO++
DOMAIN Sequence analysis
DESCRIPTION molbio++ is a C++ library for molecular biosequence analysis.
DESCRIPTION Major features include:
DESCRIPTION classes and services for reading and writing sequence data in
DESCRIPTION the following formats: Genbank Flatfile , EMBL / SwissProt
DESCRIPTION GCG / Wisconsin , Fasta / Pearson , PIR , NCBI Retrieve Server
DESCRIPTION (read-only)
DESCRIPTION limited parsing of fields and features in biosequence files
DESCRIPTION storing amino acid or nucleic acid sequences iterating over
DESCRIPTION a biosequence
DESCRIPTION calculating and storing counts or frequencies of amino acids
DESCRIPTION or nucleotides
DESCRIPTION device-independent graphics, via GCG's FIGURE program
DESCRIPTION translating nucleotide sequences into proteins using
DESCRIPTION the universal genetic code or modifications thereof.
DESCRIPTION parsing BLAST output
DESCRIPTION calculating pI and molecular weight of proteins amino acid
DESCRIPTION hydropathy values of Kyte & Doolittle
AUTHOR Keith Robison
RT -
ADDRESS Harvard University Department of Cellular and Developmental
ADDRESS Biology Department of Genetics (Harvard Medical School) / HHMI
CONTACT Keith Robison: robison at biosun.harvard.edu
SITE ftp anonymous golgi.harvard.edu
SITE Directory /pub/robison
SITE-CONTACT -
SITE ftp anonymous ftp.ebi.ac.uk
SITE Directory /pub/software/unix UNIX software are stored
SITE as archive (tar) files compressed (.Z).
SITE-CONTACT nethelp at ebi.ac.uk
OS Sparcstation
LANGUAGE C ++
