Intron splice site compilation

Benoit_Hebert at IAF.UQUEBEC.CA Benoit_Hebert at IAF.UQUEBEC.CA
Mon Oct 24 01:27:21 EST 1994

> Dear netters
> I would like to compile a consensus of intron splice site sequences
> from many GenBank sequences.
> Does anybody know of software that would read the splice site location
> from the sequence header and "extract" the surrounding DNA sequence?

you may want to start from two refs:
A survey on intron and exon lenght. JD Hawkins (1988) NAR 16(21) 9893-9908
A reappraisal of non-consensus mRNA splice sites. IJ Jackson (1991)
  NAR 19(14) 3795-3798

I hope these help.

Benoit Hebert

Benoit_Hebert at iaf.uquebec.ca

Virology Research Center
Armand-Frappier Institute, Laval, Quebec

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