In article: <1994Oct4.130524.146 at immunbio.mpg.de> HAESS at IMMUNBIO.MPG.DE (Gunther H) writes:
>> Hi netters
>> I'm searching for an amino-acid pattern searching program that includes
> the secondary structere in the pattern. It should be able to find,
> for example, a pattern of amino-acid on one side of an alpha helix
> or in an angle of 90 degrees in the horizontal cut around one special
> amino-acid.
> Does anybody know about a program which could perform such things?
>> Please answer to
>>haess at immunbio.mpg.de>>
One package that will do the query above is Iditis. Iditis is a relational
database of protein structure containing 500 fields of protein structure
data derived from the PDB. The database can be queried using a graphical
interface. Iditis was written (by myself) in Prof. Janet Thornton's lab
and is now distributed through Oxford Molecular.
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Steve Gardner
steve at gardner.demon.co.uk
