alignment for windows

[lehn at facstaff.wisc.edu]

In article <36s1k0$647 at netnews.upenn.edu>, <smoore at mail1.sas.upenn.edu> writes:
> Path: 
news.doit.wisc.edu!saimiri.primate.wisc.edu!sdd.hp.com!spool.mu.edu!howland.reston.
ans.net!cs.utexas.edu!convex!news.duke.edu!godot.cc.duq.edu!newsfeed.pitt.edu!dsinc
!netnews.upenn.edu!mail1.sas.upenn.edu!smoore

> I am looking for an alignment program for DNA and Proteins for Windows.  
> We recently revieved GeneRunner, it aligns only blocks...I want to allow 
> for Gap-penalties etc.  A nice cheap program will do, Gene Runner does 
> the rest.  
> 

> --
> Sean Moore

Try MACAW, its a great program avaliable by anonymous FTP 
from NCBI at:

ncbi.nlm.nih.gov

Its avaliable in both a Windows and Mac version.