lehn at facstaff.wisc.edu wrote:
: In article <36s1k0$647 at netnews.upenn.edu>, <smoore at mail1.sas.upenn.edu> writes:
: > Path:
: news.doit.wisc.edu!saimiri.primate.wisc.edu!sdd.hp.com!spool.mu.edu!howland.reston.
: ans.net!cs.utexas.edu!convex!news.duke.edu!godot.cc.duq.edu!newsfeed.pitt.edu!dsinc
: !netnews.upenn.edu!mail1.sas.upenn.edu!smoore
: > I am looking for an alignment program for DNA and Proteins for Windows.
: > We recently revieved GeneRunner, it aligns only blocks...I want to allow
: > for Gap-penalties etc. A nice cheap program will do, Gene Runner does
: > the rest.
: >
: > --
: > Sean Moore
: Try MACAW, its a great program avaliable by anonymous FTP
: from NCBI at:
: ncbi.nlm.nih.gov
: Its avaliable in both a Windows and Mac version.
As far as I know MACAW does also align only blocks - no global alignments
(with gap penalties etc.).
The DOS-version of ClustalV would do the job (there is no Windows-version).
Klaus
Klaus Salger
Zoologisches Institut
AG MacWilliams
Luisenstr. 14
80333 Muenchen
Germany
phone : ++49 (0)89 5902 -502
FAX : -450
e-mail: salger at zi.biologie.uni-muenchen.de
