alignment for windows

Klaus Salger salger at wap18.zi.biologie.uni-muenchen.de
Wed Oct 5 18:19:49 EST 1994

lehn at facstaff.wisc.edu wrote:

: In article <36s1k0$647 at netnews.upenn.edu>, <smoore at mail1.sas.upenn.edu> writes:
: > Path: 
: news.doit.wisc.edu!saimiri.primate.wisc.edu!sdd.hp.com!spool.mu.edu!howland.reston.
: ans.net!cs.utexas.edu!convex!news.duke.edu!godot.cc.duq.edu!newsfeed.pitt.edu!dsinc
: !netnews.upenn.edu!mail1.sas.upenn.edu!smoore

: > I am looking for an alignment program for DNA and Proteins for Windows.  
: > We recently revieved GeneRunner, it aligns only blocks...I want to allow 
: > for Gap-penalties etc.  A nice cheap program will do, Gene Runner does 
: > the rest.  
: > 

: > --
: > Sean Moore

: Try MACAW, its a great program avaliable by anonymous FTP 
: from NCBI at:

: ncbi.nlm.nih.gov

: Its avaliable in both a Windows and Mac version.

As far as I know MACAW does also align only blocks - no global alignments
(with gap penalties etc.).
The DOS-version of ClustalV would do the job (there is no Windows-version).

Klaus Salger
Zoologisches Institut
AG MacWilliams
Luisenstr. 14
80333 Muenchen

phone : ++49 (0)89 5902 -502
FAX   :                 -450
e-mail: salger at zi.biologie.uni-muenchen.de

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