I would like know there is any software
that I can use my study. here's my situation.
I have 2kb upstream of A gene from two related species
and 2kb upstream of B gene from a species. B gene is
coordinately regulated with A gene in terms of
expression pattern. Now I want to do some sequence
comparisons to extract information such as
possible sequence elements for the regulation of these genes.
Is it possible to extract such things?
If it is, is there any program or any methods I can use?
If there isn't, is there any scientists whom I can talk?
I'll appreciate your help.