databases search - protein size

Reinhard Doelz doelz at comp.bioz.unibas.ch
Sat May 7 07:58:54 EST 1994

bionet at cgmvax.cgm.cnrs-gif.fr wrote:

: >
: >I'm trying to find a way of searching databases for proteins (ideally from
: >E.Coli) with a mass in a given range (say between 10 and 18 kDa).
: >
: ATLAS will do exactly this.
: Use the command SELECT which, at the moment, is not documented...

I am not sure about the documentation but it is required to write out 
the file of sequence names, and use additional software, as ATLAS does 
(as far as I know) no homology searches. ATLAS does NOT work with 
SWISSPROT, as this database is not on the CD (as there are no real DNA 
databases on the CD, either). 


  |    Dr. Reinhard Doelz     | Tel. x41 61 2672247    Fax x41 61 2672078 |
  |      Biocomputing         | electronic Mail       doelz at urz.unibas.ch |
  |Biozentrum der Universitaet+-------------------------------------------+

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