> Dear netters.
>> I am looking for a way to reformat the documents I retrieve from genebank, swiss-protein or other databanks to either format accepted by ClustalV for example. The interfaces I have are Unix and Mac.
>> I have been using readseq but with unsatisfactory results. are there any alternatives? Are there any programms, that could split multiple sequence retrievals into multiple single-sequence files?
>> thanx for any help.
>> Helge
Try readseq by Don Gilbert (another national treasure) available free from
his treasure trove of molbio delights at ftp.bio.indiana.edu (gopher or
ftp). Versions available for everything that has a C compiler.
(Inter)converts the following formats:
1. IG/Stanford 10. Olsen (in-only)
2. GenBank/GB 11. Phylip3.2
3. NBRF 12. Phylip
4. EMBL 13. Plain/Raw
5. GCG 14. PIR/CODATA
6. DNAStrider 15. MSF
7. Fitch 16. ASN.1
8. Pearson/Fasta 17. PAUP/NEXUS
9. Zuker (in-only) 18. Pretty (out-only)
--
Harry Mangalam, VCO/Micro+Mol Genetics, Irvine Hall, College of Medicine,
UC Irvine, Irvine, CA, 92717, Vox:(714) 856-4824, Fax:(714) 725-2118,
mangalam at uci.edu
There's no better glory, when it all gets harried, to be laughing in the
midst of it all. --- Doug and the Slugs ---
