Software To Display AA Sequences?

James "Jolly" Rodgers jolly at IRIS.medc.umn.edu
Fri Feb 18 18:49:10 EST 1994

Dear Netters,

I was wondering if anyone could tell me what software can generate
the two-dimensional displays of amino acid sequence that one often sees
published.  The depictions that I am thinking of have the conserved residues
enclosed in circles, the nonconserved residues enclosed in squares,
the helical domains are given in sets of diagonal triplets, and 
transmembrane domains are shown as sets of parallel helical sequences.

Is there software around that can generate these figures or are they
simply done by brute force, using a MacIntosh?  Any leads to such
software would be appreciated.

James Rodgers
Department Of Medicinal Chemistry
University of Minnesota
Minneapolis, MN 55455

email:  jolly at iris.medc.umn.edu

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