Looking for nucleic acid structure analysis programs.

Henry A. Gabb ez257 at cleveland.Freenet.Edu
Wed Aug 10 03:02:21 EST 1994

I'm looking for a program that examines a series of structure
files (from a molecular dynamics trajectory, for example) and
reports information about hydrogen bonding and base stacking in
nucleic acids.  Before I write my own from scratch, I wanted to
know if there are programs like this already available in the
research community.

I already know about Curves since I work in the lab where it was
written.  It's too slow for the number of structures that I have
and gives more information than I currently need.  After I get
the rudimentary structural info I will perform a Curves analysis
on the important structures.

Henry Gabb (henry at ibpc.fr)
13 rue Pierre et Marie Curie
Paris 75005

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