I'm looking for a program that examines a series of structure
files (from a molecular dynamics trajectory, for example) and
reports information about hydrogen bonding and base stacking in
nucleic acids. Before I write my own from scratch, I wanted to
know if there are programs like this already available in the
research community.
I already know about Curves since I work in the lab where it was
written. It's too slow for the number of structures that I have
and gives more information than I currently need. After I get
the rudimentary structural info I will perform a Curves analysis
on the important structures.
Thanks,
--
Henry Gabb (henry at ibpc.fr)
13 rue Pierre et Marie Curie
Paris 75005
France
