eugene vs GB83

William R. Pearson wrp at dayhoff.med.Virginia.EDU
Thu Aug 4 13:43:27 EST 1994

	The latest release of Genbank (83, but 82 may have had a
problem as well) broke the part of the Eugene/SAM software package
that extracts sequences from Genbank.  Eugene was not prepared for a
gbpri.seq file (or any other .seq) longer than 100 mbytes.

	The fix is simple; in the file:


change the two lines in the printf() statements that write out the .idx
files to larger values.  (hint: look for \t%8d\t%8d and change the 8's to

	Then re-index the database.

Bill Pearson
the last Eugene/SAM ...

More information about the Bio-soft mailing list

Send comments to us at biosci-help [At] net.bio.net