Dear Netters,
I am looking for a program that calculates the RMS distance between a given
set of homologous molecular structures. I mean something that could read
PDB files,
possibly ask which atoms to compare (P or all nt atoms for nucleic acids,
C-alpha or all AA atoms for proteins) - although of course one can do this
by hand with any editor, then perform the calculation and give a distance
matrix
as output.
Does anything like this exist?
[Any of this OS will be OK (in order of preference): Mac, Unix, Windows, DOS.]
Thank you very much in advance,
Luca Jovine
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Luca Jovine
Dipartimento di Biologia e di Genetica dei Microrganismi
Universita' degli Studi di Milano
Via Celoria 26
I-20133 Milano
ITALY
Voice: +39.2.26605213
FAX: +39.2.2664551
E-Mail: jovinel at imiucca.csi.unimi.it [jovinel at 159.149.10.1]
"I'll give you a definitive maybe" (Sam Goldwyn)
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