NCBI BLAST Output filters

Littlejohn Tim little at ERE.UMontreal.CA
Tue Sep 14 14:27:12 EST 1993


has anyone written any parsers for UNIX (shell scripts or C)
to filter the output of BLAST so that the following information
can be viewed on request:

	- header information 
	- histogram (somtimes we want to see it and this decision is 
	  best made after doing the search)
	- Query, Database, one-line descriptions of the database 
	  sequences that yielded one or more HSPs
	- high-scoring segment pairs
	- Parameters and/or Statistics



E-mail:     little at ere.umontreal.ca         Tim Littlejohn 
            tim at bch.umontreal.ca
Snail Mail: Departement de biochimie        Phone: (514) 343-6111, x5149
            Universite de Montreal          Fax:   (514) 343-2210 
            C.P. 6128, succursale A,
            Montreal (Quebec), H3C 3J7

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