Subject: GenPept Release 77.0 flat file format available via anonymous ftp
From: fconvx.ncifcrf.gov
Directory: pub/genpept
Files: gprel77.txt.Z, gpdat77.seq.Z
Rel. Date: 15-June-1993
This is to announce the availability release 77.0 of the GenPept(R)
(GenBank Gene Products) Database. GenPept is provided in a format similar
to that formerly distributed by GenBank(R) under the administration of
Intelligenetics Inc. The last official full release of GenPept was in June,
1992 (Release 72.0), with incremental releases made available via ftp from
ncbi.nlm.nih.gov. NCBI also continues to provide a GenPept datafile pre-
formatted for use with the Pearson & Lipman Fasta program. This GenPept
release IS _NOT_ AN OFFICIAL RELEASE FROM THE NCBI-GENBANK, but an attempt to
provide a data file compatible with other existing software products. An
example entry is shown below:
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LOCUS A7NIFH_1
DEFINITION Cyanobacteria anabaena 7120 nifH gene (nitrogenase reductase).
NifH reading frame.
DATE 08-SEP-1990
ACCESSION V00001
ORGANISM Anabaena 7120 Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria;
Cyanobacteria; Nostocales; Nostocaceae.
COMMENT Nucleic Acid Features translated to generate this entry:
CDS 195..1091 /note="nifH reading frame" /codon_start=1
WEIGHT 32814.20
LENGTH 299
ORIGIN Translated using phase 1
1 MTDENIRQIA FYGKGGIGKS TTSQNTLAAM AEMGQRIMIV GCDPKADSTR LMLHSKAQTT
61 VLHLAAERGA VEDLELHEVM LTGFRGVKCV ESGGPEPGVG CAGRGIITAI NFLEENGAYQ
121 DLDFVSYDVL GDVVCGGFAM PIREGKAQEI YIVTSGEMMA MYAANNIARG ILKYAHSGGV
181 RLGGLICNSR KVDREDELIM NLAERLNTQM IHFVPRDNIV QHAELRRMTV NEYAPDSNQG
241 QEYRALAKKI NNDKLTIPTP MEMDELEALK IEYGLLDDDT KHSEIIGKPA EATNRSCRN
//
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Sample entry from GenPept flat file.
This format of the data is suitable as an input data file for the GCG
program GenBankToGCG/GENPEPT. Compatibility with other software has not
been tested.
If you have questions or comments concerning this data file, please contact:
-------------------------------------------------------------------------------
Mark A. Gunnell | Internet: gunnell at ncifcrf.gov
Sci. Applications Analyst | Bitnet: gunnell%ncifcrf.gov at cunyvm.bitnet
Biomedical Supercomputer Center | Phone: (301) 846-5779
PRI/DynCorp |
NCI-FCRDC |
PO Box B, Bldg 430 |
Frederick, MD 21702-1201 USA |
===============================================================================
GenPept (R) is a registered trademark of the U.S. Department of Health and
Human Services for the GenBank Gene Products Data Bank.
GenBank (R) is a registered trademark of the U.S. Department of Health and
Human Services for the Genetic Sequence Data Bank.
