>>I am looking for a program which will allow me to display/print the
>alignment I have made of a set of protein sequences. Ideally, it will
>shade, or otherwise highlight, the residues that match a consensus,
>allowing for conservative replacements; it would be nice to
>distinguish highly conserved from less conserved residues.
>
Try MALIGNED, also available from EMBL. I like it. Can import plain GCG or
LINEUP files but, unfortunately, not CLUSTAL files.
Good luck,
Jean-Loup
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Jean-Loup Risler Tel: (33 1) 69 82 31 34
CNRS Fax: (33 1) 69 07 49 73
Centre de Genetique Moleculaire Email: risler at cgmvax.cgm.cnrs-gif.fr
91198 Gif sur Yvette Cedex France Email: risler at frcgm51.bitnet
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