displaying alignments

bionet bionet%frcgm51.earn at earn-relay.ac.uk
Tue Dec 21 13:26:25 EST 1993

>I am looking for a program which will allow me to display/print the
>alignment I have made of a set of protein sequences. Ideally, it will
>shade, or otherwise highlight, the residues that match a consensus,
>allowing for conservative replacements; it would be nice to
>distinguish highly conserved from less conserved residues.

Try MALIGNED, also available from EMBL. I like it. Can import plain GCG or
LINEUP files but, unfortunately, not CLUSTAL files.

Good luck,


  Jean-Loup Risler                      Tel:  (33 1) 69 82 31 34
  CNRS                                  Fax:  (33 1) 69 07 49 73
  Centre de Genetique Moleculaire       Email: risler at cgmvax.cgm.cnrs-gif.fr
  91198 Gif sur Yvette Cedex  France    Email: risler at frcgm51.bitnet

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