In article <1993Dec9.100831.22451 at genes.icgeb.trieste.it>,
pongor at genes.icgeb.trieste.it (Sandor Pongor) wrote:
> The SBASE e-mail server accepts a specially formatted mail message
> containing a protein query sequence, and, as a response, it sends the list
> of the most probable domain homologies. A database search is performed
> against the SBASE library of protein domains using the BLAST algorithm,
> and the search results, provided with annotations, are returned in a mail
> message.
>>> How to use:
>
Included below is a specification for this new service for use with my MSU
(mail server utility) program. Just include it into SPECFILE.
MSU can be obtained from ftp.embl-heidelberg.de (/pub/software/unix and
/pub/software/vax).
###
# SBASE Mail server
# 10-Dec-1993
###
service-name: SBASE
service-info: Protein domain detection
service-addr: sbase at icgeb.trieste.it
--
help-address: sbase at icgeb.trieste.it
help-body: help
//
service-prot-options:
start-token: BEGIN
seq-format: FASTA
--
msu-object:
obj-name: Include annotation
obj-info: Include complete annotation of domains in output
obj-tag: ANNOTATIONS
obj-class: Group
elements: 2
def: 1
items: YES, NO
--
msu-object:
obj-name: Scoring matrix
obj-info: Scoring matrix applied for sequence comparisons
obj-tag: MATRIX
obj-class: Group
elements: 5
def: 1
items: PAM120, PAM250, PAM40, BLOSUM60, BLOSUM80
--
msu-object:
obj-name: Cutoff score
obj-info: Cutoff score for displaying homologies
obj-tag: SCORE PARAMETER
obj-class: Int
min: 30
max: 100
def: 35
--
Rainer Fuchs
EMBL Data Library
Fuchs at EMBL-Heidelberg.DE
