Is there a good alignment program?

[farmerj at yvax.byu.edu]

     Two of my colleagues and I are looking for a program which
will align DNA sequences from different populations and from
different species.  We would like to be able to align several
(ten or more) sequences at a time.  I can run it in DOS, MS Windows, or OS/2.
We also have the ability to run it on a VAX.

     The program we own, an older version of PCGene, is not
adequate for our needs.  If possible, we would like to avoid
purchasing another big program that does a huge number of things
that we don't need to do.  We would be happy with a stand-alone
alignment program.

     Can anyone point us to a freeware, shareware, or commercial
program which might meet our needs?

     Thanks.

James L. Farmer

Department of Zoology
571 WIDB
Brigham Young University
Provo, Utah 84602, USA

(801) 378-2153 (OFFICE)
(801) 378-7499 (FAX)

FARMERJ at YVAX.BYU.EDU
FARMERJ at BYUVAX.BITNET