From: IN%"SMTP at ricevm1.rice.edu" 24-JUN-1992 18:46:09.12
To: IN%"<@ricevm1.rice.edu:FVEGA at CINVESMX.BITNET>" "FVEGA"
CC:
Subj: Undeliverable Mail
Received: from Jnet-DAEMON by CINVESMX.BITNET (PMDF #12247) id
<01GLLPO6RCDW00029W at CINVESMX.BITNET>; Wed, 24 Jun 1992 18:45 CST
Received: From RICEVM1(MAILER) by CINVESMX with Jnet id 2808 for
FVEGA at CINVESMX; Wed, 24 Jun 1992 18:45 CST
Received: from RICEVM1 by RICEVM1.RICE.EDU (Mailer R2.08 R208004) with BSMTP id
4180; Wed, 24 Jun 92 19:01:32 CDT
Date: Wed, 24 Jun 92 19:01:32 CDT
From: SMTP at ricevm1.rice.edu
Subject: Undeliverable Mail
To: FVEGA <@ricevm1.rice.edu:FVEGA at CINVESMX.BITNET>
Message-id: <01GLLPO6RCDW00029W at CINVESMX.BITNET>
ricevm1.rice.edu unable to deliver following mail to recipient(s):
<comp-bio at genebank.bio.net>
550 Host 'genebank.bio.net' Unknown
** Text of Mail follows **
Received: from RICEVM1.RICE.EDU by ricevm1.rice.edu (IBM VM SMTP V2R2)
with BSMTP id 6769; Wed, 24 Jun 92 19:01:31 CDT
Received: from RICEVM1 by RICEVM1.RICE.EDU (Mailer R2.08 R208004) with BSMTP id
4178; Wed, 24 Jun 92 19:01:30 CDT
Received: from CINVESMX.BITNET by ricevm1.rice.edu (IBM VM SMTP V2R2)
with BSMTP id 6767; Wed, 24 Jun 92 19:01:25 CDT
Received: from CINVESMX.BITNET by CINVESMX.BITNET (PMDF #12247) id
<01GLLNAXX41K00023J at CINVESMX.BITNET>; Wed, 24 Jun 1992 17:37 CST
Date: Wed, 24 Jun 1992 17:37 CST
From: FVEGA%CINVESMX.BITNET at ricevm1.rice.edu
Subject: A problem in Database Searching
To: bio-soft at genebank.bio.net
Cc: comp-bio at genebank.bio.net
Message-id: <01GLLNAXX41K00023J at CINVESMX.BITNET>
X-Envelope-to: bio-soft at genebank.bio.net, comp-bio at genebank.bio.net
X-VMS-To: IN%"bio-soft at genebank.bio.net"
X-VMS-Cc: IN%"comp-bio at genebank.bio.net"
Dear Netters,
I have a problem in database searching that I hope someone out
there could help me. I am interested in locating genes of E. coli that
end with the UGA stop codon and which partially overlaps the AUG start
codon of the following gene. That is, I am looking for a AUGA pattern,
but just those cases that indeed are gene overlapings.
I used PatternSearch from the GCG Package, but as most can imagine
the background of all AUGA sub-sequences that does not correspond to real
gene overlapings is enormously high. I dont dare to inspect this output
to locate by hand (looking at each GenBank entry) the real overlapings..
Does someone knows a software that could do this for me?
Many thanks,
Francisco M. De La Vega
Department of Genetics and Molecular Biology
CINVESTAV-IPN, Mexico City, Mexico.
E-Mail: FVEGA at CINVESMX.Bitnet
