Greetings BIONAUTS, Internetters, NetFolk, GCG/Ig Consultants,
I have just downloaded the AIDS database produced by Gerald D. Myers and Kersti
McInnes from the NCBI data repository. After unpacking I have now ended up
with a directory structure as below. I want to convert these sequences to a
GCG and Ig data library. Both these packages have the tools to handle the
GenBank and PIR formatted entries but I was wondering if anyone had written a
quick jiffy just to pick out the sequences and ignore the alignments and
supporting info (I dont want to reinvent the wheel). Also could anyone tell me
the difference between a file with no extensiona and a .NF extension file diffs
would suggest only changes in the annotation and not the sequence.
Many ADVthanksANCE - and a Merry Chritmas and a Peaceful New Year!
Tony Parsons - Pfizer Central Research (UK) <<parsons_ at snd01.pcr.co.uk>>
========================= AIDS DB subdirectory structure ===================
[.DATABASE]---+
|
|--[.NUC_A]------+--[.AGM]
| |--[.HIV_1]---------[.HFL]
| | |
| | +--[.NUC_CONS]
| |--[.HIV_2]
| |--[.MND]
| |--[.RELATED]
| +--[.SIV]
+--[.PRO_A]------+--[.AGM]
|--[.HIV_1]---------[.HFL]
| |
| +--[.PRO_CONS]
|--[.HIV_2]
|--[.MND]
|--[.RELATED]
+--[.SIV]
