SeqaidII has a program for mapping the "antigenicity"
of a protein. Seqaid is available from the normal ftp severs:
Host fly.bio.indiana.edu
Location: /molbio/ibmpc
FILE -rw-r--r-- 324175 May 14 1991 seqaidfd.uue
Host genbank.bio.net
Location: /pub/dos
FILE -rw-rw-r-- 6167 Oct 26 1989 seqaid.doc
FILE -rw-rw-r-- 324175 Jul 14 1989 seqaidfd.uue
Host nic.funet.fi
Location: /pub/sci/molbio/msdos
FILE -rw-r--r-- 251259 Feb 3 15:50 seqaid.exe
FILE -rw-rw-r-- 305448 Jun 23 1991 seqaid37.shar
FILE -rw-r--r-- 73370 Feb 3 15:50 seqaidfd.exe
Kudos to Don, Dan and Rob for the ftp sites!
Hope this helps,
Dan Jacobson
danj at welchgate.welch.jhu.edu
