Is blast capable of searching genbank using the IUB ambiguous
designations of nucleotides and responding properly
for example
TGGATGTAYCAR
:::::: : :::
TGGATGCAACAG
Or is there other software accessible by an e-mail search server or
for a unix machine which will do this?
The use I am interested in is the design of degenerate PCR primers.
--
Frank Kolakowski
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|lfk at athena.mit.edu or lfk at eastman1.mit.edu or kolakowski at wccf.mit.edu|
| Lee F. Kolakowski M.I.T. |
| Dept of Chemistry Room 18-506 |
| 77 Massachusetts Ave. Cambridge, MA 02139 |
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