> Our users have recently gotten hits for sequences not in our local
> copies of the most recent quarterly database updates. Are the daily updates
> now being included in the BLAST server's databases?
No. I would have announced this on GENBANK-BB/bionet.molbio.genbank
if this was the case. I have no idea from the above about which
database(s) are involved. Our version of SWISS-PROT was obtained by
FTP and may be more recent than a copy at your site if it was received
kristoff at genbank.bio.net