Eric Cabot writes:
=>
=> Hi netters,
=> Can someone please email or post the format specifications of the
=> sequence files used by Staden's programs?
=>
=> Thanks,
=>
The staden format is plain text with a hard carrage return at the
end of the line (usually 60 characters long). There also can be
a single header line enclosed by less_than greater_than signs.
The following lines are a typical "staden-format" file. Note
that there is nothing at the end of the file as there is with
other formats.
<--puc19.dat-->
GACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTT
CTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTT
TCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAAT
AATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTT
TTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATG
CTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGA
TCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGC
TATGTGGCGCGGTATTATCCCGTGTTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATAC
ACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATG
GCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCA
ACTTACTTCTGAC
Cheers,
/o o\ \ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /\ /
o X X X X X X X X X X X X X X X X X X X X X
\O/ / \/ \/ \/ \/ \/ \/ \/ \/ BROE at aardvark.ucs.uoknor.edu
