On 1 Oct 91 02:02:46 GMT,
eesnyder at boulder.Colorado.EDU (Eric E. Snyder) said:
> I am looking for a program that will detect palindromes,
> inverted or direct repeats in a given DNA sequence. Does
> any one have or know where I could find such a program?
Stadens STuff does this...
nip has a part called
Structures and repeats menu
0 = List of menus
30 = Search for hairpin loops
31 = Search for long range inverted repeats
32 = Search for repeats
33 = Search for z dna (total ry,yr)
34 = Search for z dna (runs of ry or yr)
35 = Search for z dna (best phased value)
36 = Search for local similarity or complementarity
? Menu or option number=
This does a pretty good job of searching for repeats.
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| Lee F. Kolakowski M.I.T. |
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