Does anyone know of a program (preferable public domain, but anyway
usable) available via anonymous ftp or other network distribution path which
will analyse the secondary structure present in a given set of protein
coordinates?
That is, I want to go from known atomic positions (not sequence)
to a listing of which residues are involved in beta-sheet, helix, etc.
I am aware of programs by Kabsch & Sander and Levitt & Greer; no doubt
others exist as well. What I don't know is whether any of them are available
via ftp/Email/list-server.
Ethan A Merritt
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Dept of Biological Structure H510 Health Sciences
University of Washington SM-20 (206)543-8865
Seattle, WA 98195 merritt at u.washington.edu
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