A lot of software has been added to the UH Gene-Server in the past few
days. This note details the additions. There's something for everyone
here!
Note especially the multiple sequence alignment editors for VMS
(MALIGNED by Steve Clark), Unix (GDE, Genetic Data Environment by
Steve Smith) and PIMA,(Pattern Induced Multiple Alignment by Randy
Smith), and the Mac (MSE, by Ralph Gonzalez). You now have no excuse
not to have one...
All files are now avaiable via anonymous FTP from menudo.uh.edu,
129.7.1.6, in ~ftp/pub/genbank-server/vms, unix, dos, or mac.
N.B. All GenBank files have been updated also.
VMS:
204800 Jun 26 22:19 maligned.uue Steve Clark's MALIGNED multiple
sequence alignment editor (great name!)
Note the size...
91921 Jun 26 22:12 scrutine.uaa Newest SCRUTINEER, analysis for VMS
91922 Jun 26 22:12 scrutine.uab
91922 Jun 26 22:12 scrutine.uac
91922 Jun 26 22:12 scrutine.uad
91922 Jun 26 22:12 scrutine.uae
91922 Jun 26 22:12 scrutine.uaf
91922 Jun 26 22:12 scrutine.uag
91922 Jun 26 22:12 scrutine.uah
91922 Jun 26 22:12 scrutine.uai
91923 Jun 26 22:12 scrutine.uaj
91923 Jun 26 22:12 scrutine.uak
22754 Jun 26 22:12 scrutine.ual
84071 Jun 26 22:26 boxshade.uue K. Hoffman's shading sequence pgm
MAC
97986 Jun 26 22:01 dbconv1.hqx Convert flat file to tab-delimited
46765 Jun 26 22:01 dbconv2.hqx by J. Valverde
97990 Jun 26 22:01 embl-search1.hqx R. Fuchs db retrieval for EMBL
48613 Jun 26 22:01 embl-search2.hqx CD-ROM only
97988 Jun 26 22:00 seqspeak1.hqx Sequence entry with sound
98072 Jun 26 22:00 seqspeak2.hqx by K. Conover
30110 Jun 26 22:00 seqspeak3.hqx
653681 Jun 26 22:24 internet-tour.hqx A tour of the Internet
6808 Jun 26 22:24 internet-tour.readme readme for above
9073 Jun 26 22:52 mse.hqx Hypercard 2.0 stak for up to 6-seq
align & ed
UNIX
242 Jun 26 20:22 gde.readme Genetic Data Environment by S. Smith, readme
185961 Jun 26 20:21 gde1.0.uaa version 1.0 tar file
186000 Jun 26 20:21 gde1.0.uab
9064 Jun 26 20:21 gde1.0.uac
131874 Jun 26 20:21 gdeps.uue uuencoded, compress postscript doc file
185965 Jun 26 20:21 gdesrc.uaa complete source code for GDE
186000 Jun 26 20:21 gdesrc.uab
21980 Jun 26 20:21 gdesrc.uac
27815 Jun 26 20:23 gdetxt.uue uuencoded text file of ps doc file
92963 Jun 26 20:24 pima.uaa Randy Smith's Pattern Induced Multiple
93000 Jun 26 20:24 pima.uab Alignment (PIMA) program, version 1.0
93000 Jun 26 20:24 pima.uac
93000 Jun 26 20:24 pima.uad
93000 Jun 26 20:24 pima.uae
93000 Jun 26 20:24 pima.uaf
93000 Jun 26 20:24 pima.uag
33926 Jun 26 20:24 pima.uah
70177 Jun 26 22:29 overseer.uue Nucleic acid sequence analysis
DOS
91915 Jun 26 21:56 cutcost.uaa New version. Estimate cost of restiction
14568 Jun 26 21:56 cutcost.uab enzyme use. C.G. Meinhof
91918 Jun 26 21:56 prograph.uaa New version of Prograph, protein
91921 Jun 26 21:56 prograph.uab sequence analysis package by
91921 Jun 26 21:56 prograph.uac K. Hoffman
91921 Jun 26 21:56 prograph.uad
25839 Jun 26 21:56 prograph.uae
95068 Jun 26 22:14 dnaclone.uaa Revised DNACLONE, clone
95071 Jun 26 22:14 dnaclone.uab and strain management
85386 Jun 26 22:14 dnaclone.uac
88005 Apr 23 1990 dnaclone.uue
To get started with the UH Gene-Server send the word
HELP
to
gene-server at bchs.uh.edu
or
gene-server%bchs.uh.edu at CUNYVM
from BITNET.
Briefly, to retrieve any file use the command (for example)
send unix pima.uaa pima.uab pima.uac
and you can subsitute "dos", "vms", or "mac" for "unix" in the above.
These files will be appearing on the EMBL, FUNET, and IUBIO servers
soon.
Questions will be answered as time permits.
dan
--
dr. dan davison/dept. of biochemical and biophysical sciences/univ. of
Houston/4800 Calhoun/Houston,TX 77204-5934/davison at uh.edu/DAVISON at UHOU
Disclaimer: As always, I speak only for myself, and, usually, only to
myself.
