Here is the most recent list of molecular biological software available from
the EMBL File Server.
Programs which have been added or updated since April are marked by an
asterisk.
To get information about the EMBL File Server and the software archives send a
mail message to NETSERV at EMBL.BITNET containing the lines
HELP
HELP SOFTWARE
Rainer Fuchs, Ph.D.
EMBL Data Library
fuchs at embl.bitnet
DOS_SOFTWARE
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filename ALX3.UUE
author Gotoh O.
description Alignment of three protein or DNA sequences
literatur J. Theor. Biol. 121 (1986), 327-337
filename BIGMOUTH.UUE
author Jenson, H. B.
description Digitized sounds and utilities for TypeSeq and DigiSeq
literatur -
filename CIP.UUE
author Jenson, H. B.
description Calculation of reaction conditions for dephosphorylation
literatur -
filename CLONES.UAA
author Jenson, H. B.
description Management of clones, strains, libraries etc. databases
(Part 1 of 2)
literatur BioTechniques 7 (1989), 590-592
filename CLONES.UAB
author Jenson, H. B.
description Management of clones, strains, libraries etc. databases
(Part 2 of 2)
literatur BioTechniques 7 (1989), 590-592
filename CMOLECUL.UUE
author Thompson J. R. (Cedergren R.)
description graphics output of PCFOLD result files
literatur Nucl. Acids Res. 10 (1982), 8351-8356
filename DETAR.UUE
author VALVERDE J. R.
description Utility to extract .TAR files
literatur -
filename DIGISEQ.UUE
author Jenson, H. B.
description Sequence input using digitizer
literatur CABIOS 4 (1988), 218
filename DNACLONE.UAA
author Roy T. K.
description Management of clones, strains, libraries etc. databases
(Part 1 of 2)
literatur CABIOS 5 (1989), 321-322
filename DNACLONE.UAB
author Roy T. K.
description Management of clones, strains, libraries etc. databases
(Part 2 of 2)
literatur CABIOS 5 (1989), 321-322
filename ELBAMAP.UUE
author King G. J.
description Management of electrophoresis banding patterns
literatur CABIOS 5 (1989), 313-317
filename EMOLECUL.UUE
author Thompson J. R. (Cedergren R.)
description graphics output of PCFOLD result files
literatur Nucl. Acids Res. 10 (1982), 8351-8356
*filename ESEE.UUE
author CABOT E.L.
description Multiple sequence editor
literatur CABIOS 5 (1989), 233-234
filename EZ-FIT.UUE
author Perella F. W.
description Calculation of enzyme and receptor kinetics
literatur Anal. Biochem. 174 (1989), 437-447
filename FAST.UUE
author Facchiano, A.
description Protein structure analysis
literatur CABIOS 5 (1989), 299-303
filename GEL.UUE
author Thompson J. R.
description Calculation of DNA restriction fragment sizes
literatur Anal. Biochem. 115 (81), 113-122
filename HMOLECUL.UUE
author Thompson J. R. (Cedergren R.)
description graphics output of PCFOLD result files
literatur Nucl. Acids Res. 10 (1982), 8351-8356
filename HYDRASC.UUE
author Penttila T. J.
description Contour map for two polypeptide sequences.
Regions with similar hydropathic properties and second.
structure properties are plotted.
literatur CABIOS, in prep.
filename LIGATE.UUE
author Jenson, H. B.
description Calculation of reaction conditions for ligation
literatur BioTechniques 5 (1987), 729-730
*filename MELPROT.UUE
author Sikaris K.
description Secondary structure prediction and plotting
literatur CABIOS 5 (1989), 323
*filename MELT.UUE
author Nash J.H.E.
description Melting point calculation of oligonucleotides
literatur -
filename MOLECSRC.UUE
author Thompson J. R. (Cedergren R.)
description Source code for *MOLECUL.UUE
literatur Nucl. Acids Res. 10 (1982), 8351-8356
filename MOTIF.UUE
author Giles I.
description Motif searching program
literatur CABIOS 5 (1989), 227-232
*filename MULTALIN.UUE
author Corpet F.
description Multiple sequence alignment
literatur Nucl. Acids Res. 16 (1988), 10881-10890
filename OLIGO.UUE
author Beadles K.
description Oligo-directed single amino acid substitution
literatur -
filename PATTERN.UUE
author Giles I.
description Pattern searching program
literatur CABIOS 5 (1989), 227-232
filename PCFOLD.UUE
author Zuker M.
description RNA folding
literatur Meth. Enzymology 180 (1989), 262-288
filename PLASMID.UUE
author Lipsick J.
description Plasmid drawing program (CGA card req.)
literatur -
filename PREDICT.UUE
author Carmenes R. S.
description Protein secondary structure predictions
literatur Biochem. Biophy. Res. Commun. 15 (1989), 687-698
filename PRONET.UUE
author Pascarella S.
description Protein structure prediction with a neural network
literatur CABIOS 5 (1989), 319-320
filename SDSE.UAA
author Oliver J. L.
description Simulation of DNA sequence evolution (Part 1 of 2)
literatur CABIOS 5 (1989), 47-50
filename SDSE.UAB
author Oliver J. L.
description Simulation of DNA sequence evolution (Part 2 of 2)
literatur CABIOS 5 (1989), 47-50
filename SEQAID.UUE
author Roufa D.
description DNA and protein sequence analysis package
literatur -
filename SIGSEQ.UUE
author Popowicz A.M.
description Prediction of signal sequence cleavage site
literatur CABIOS 4 (1988), 405-406
*filename SUBSIS.UUE
author Mandler J.
description Subdirectory handling with DNASIS(tm) or PROSIS(tm)
literatur CABIOS, in press
filename TDALIGN.UUE
author Davison D. (Thompson K.)
description Sequence alignment
literatur -
filename TYPESEQ.UUE
author Jenson, H. B.
description Sequence input using keyboard
literatur CABIOS 4 (1988), 218
VAX_SOFTWARE
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*filename AMPHI.UUE
author Jaehnig F.
description Prediction of membran protein structure
literatur Trends in Biochemistry 3 (1990)
filename BUGFIX_6_1.GCG
author -
description Fixes for several bugs in GCG package v6.1
literatur -
*filename CD_ACCESS.UUE
author Stockwell P.A.
description Driver software for ISO-formatted CD-ROMs
literatur -
filename CLUSTAL.UUE
author Higgins D.
description Multiple sequence alignment
literatur Gene 73 (198), 237-244
*filename FASTEMBL.COM
author Sonnhammer E. L. (Clark S.)
description DCL shell for facilitating EMBL Mail-FASTA access
literatur -
filename GCGDBASE.UUE
author Rice P.
description GCG extensions developed at EMBL for using new EMBL
distribution format
literatur -
*filename GCGQUICK.UUE
author Rice P.
description GCG extensions developed at EMBL for speeding up
QuickSearch
literatur -
filename GCGEMBL.UAA
ASCII conversion UUE (split)
author Rice P.
description GCG extensions developed at EMBL (part 1 of 2)
literatur -
filename GCGEMBL.UAB
author Rice P.
description GCG extensions developed at EMBL (part
