During the last month we have received quite a lot of new software submissions
to the EMBL File Server. Included you will find a list of all programs now
available from the server. For more information, send a mail message ( *no*
interactive message !) to NETSERV at EMBL, containing the lines:
HELP
HELP SOFTWARE
New programs:
CIP (DOS)
Clones (DOS)
ElBaMap (DOS)
FAST (with CHAMP database) (DOS)
Ligate (DOS)
ProNet (DOS)
MiniMM (Mac)
RefStack (Mac)
The GenBank Software Clearinghouse Catalog (kindly provided by GenBank).
Rainer Fuchs, Ph.D.
EMBL Data Library
fuchs at embl.bitnet
Directory of MS DOS Molecular Biology Software on EMBL File Server
------------------------------------------------------------------
To receive files from this directory use the command:
GET DOS_SOFTWARE:filename.ext
(a) Molecular Biology Software
filename ALX3$.UUE
version 1.0
size 140 k
compressed PAK
ASCII conversion UUE
author Gotoh O.
description Alignment of three protein or DNA sequences
literatur J. Theor. Biol. 121 (1986), 327-337
source code -
sw requirements -
hw requirements -
filename CIP$.UUE
version -
size 65 k
compressed PAK
ASCII conversion UUE
author Jenson, H. B.
description Calculation of reaction conditions for dephosphorylation
literatur -
source code -
sw requirements -
hw requirements -
filename CLONES$.UAA
version -
size 190 k
compressed PAK
ASCII conversion UUE (split)
author Jenson, H. B.
description Management of clones, strains, libraries etc. databases
(Part 1 of 2)
literatur BioTechniques 7 (1989), 590-592
source code -
sw requirements -
hw requirements -
filename CLONES$.UAB
version -
size 45 k
compressed PAK
ASCII conversion UUE (split)
author Jenson, H. B.
description Management of clones, strains, libraries etc. databases
(Part 2 of 2)
literatur BioTechniques 7 (1989), 590-592
source code -
sw requirements -
hw requirements -
filename CMOLECUL.UUE
version May 87
size 70 k
compressed PAK
ASCII conversion UUE
author Thompson J. R. (Cedergren R.)
description graphics output of PCFOLD result files
literatur Nucl. Acids Res. 10 (1982), 8351-8356
source code available as MOLECSRC.UUE
sw requirements -
hw requirements CGA card
filename ELBAMAP.UUE
version 2.2
size 55 k
compressed PAK
ASCII conversion UUE
author King G. J.
description Management of electrophoresis banding patterns
literatur CABIOS 5 (1989), 313-317
source code -
sw requirements -
hw requirements EGA card
filename EMOLECUL.UUE
version May 87
size 70 k
compressed PAK
ASCII conversion UUE
author Thompson J. R. (Cedergren R.)
description graphics output of PCFOLD result files
literatur Nucl. Acids Res. 10 (1982), 8351-8356
source code available as MOLECSRC.UUE
sw requirements -
hw requirements EGA card
filename EZ-FIT$.UUE
version 1.1
size 170 k
compressed PAK
ASCII conversion UUE
author Perella F. W.
description Calculation of enzyme and receptor kinetics
literatur Anal. Biochem. 174 (1989), 437-447
source code -
sw requirements -
hw requirements CGA card
filename FAST$.UUE
version -
size 195 k
compressed PAK
ASCII conversion UUE
author Facchiano, A.
description Protein structure analysis
literatur CABIOS 5 (1989), 299-303
source code -
sw requirements -
hw requirements -
filename GEL$.UUE
version 17.2.89
size 50 k
compressed PAK
ASCII conversion UUE
author Thompson J. R.
description Calculation of DNA restriction fragment sizes
literatur Anal. Biochem. 115 (81), 113-122
source code Pascal
sw requirements (Turbo Pascal for recompiling)
hw requirements -
filename HMOLECUL.UUE
version May 87
size 70 k
compressed PAK
ASCII conversion UUE
author Thompson J. R. (Cedergren R.)
description graphics output of PCFOLD result files
literatur Nucl. Acids Res. 10 (1982), 8351-8356
source code available as MOLECSRC.UUE
sw requirements -
hw requirements Hercules card
filename HYDRASC$.UUE
version 1
size 30 k
compressed PAK
ASCII conversion UUE
author Penttila T. J.
description Contour map for two polypeptide sequences.
Regions with similar hydropathic properties and second.
structure properties are plotted.
literatur CABIOS, in prep.
source code -
sw requirements MATLAB-PC
hw requirements Math. co-processor, >2M RAM
filename LIGATE$.UUE
version -
size 75 k
compressed PAK
ASCII conversion UUE
author Jenson, H. B.
description Calculation of reaction conditions for ligation
literatur BioTechniques 5 (1987), 729-730
source code -
sw requirements -
hw requirements -
filename MOLECSRC.UUE
version May 87
size 70 k
compressed PAK
ASCII conversion UUE
author Thompson J. R. (Cedergren R.)
description Source code for *MOLECUL.UUE
literatur Nucl. Acids Res. 10 (1982), 8351-8356
source code Pascal
sw requirements Turbo Pascal
hw requirements -
filename MOTIF$.UUE
version - (bug fix with plain ASCII sequences)
size 45 k
compressed PAK
ASCII conversion UUE
author Giles I.
description Motif searching program
literatur CABIOS 5 (1989), 227-232
source code C
sw requirements (Turbo C for recompiling)
hw requirements -
filename OLIGO.UUE
version 1.0
size 105 k
compressed PAK
ASCII conversion UUE
author Beadles K.
description Oligo-directed single amino acid substitution
literatur -
source code -
sw requirements -
hw requirements -
filename PATTERN$.UUE
version -
size 55 k
compressed PAK
ASCII conversion UUE
author Giles I.
description Pattern searching program
literatur CABIOS 5 (1989), 227-232
source code C
sw requirements (Turbo C for recompiling)
hw requirements -
filename PCFOLD$.UUE
version 4.0
size 160 k
compressed PAK
ASCII conversion UUE
author Zuker M.
description RNA folding
literatur Meth. Enzymology 180 (1989), 262-288
source code Fortran, Asm
sw requirements (Compiler for recompiling)
hw requirements -
filename PLASMID.UUE
version 1.1
size 75 k
compressed PAK
ASCII conversion UUE
author Lipsick J.
description
