Trying not to play fast and loose on my language: It may be more
precise to say that the consensus calls depend on the quality scores.
I'm less certain how important they are to the phrap's actual
alignment algorithm.
>>Now a relevant question: How is Phred/Phrap actually going to do on
>LiCor Data? the assembly depends on the phred quality calls and I
>would like (well, need) to know how reasonable those calls are for
>li-cor data.
>-James
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James VanEe Phone: (607) 254-4862
BioResource Center
Computing Facilty
170/171 Biotech Bldg Fax: (607) 254-4847
Cornell University
Ithaca, NY 14853 www: http://brcweb.bio.cornell.edu
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