direct and inverted repeats

TNelson1 tnelson1 at aol.com
Sat Jun 19 10:14:39 EST 1999

Do a dot plot comparing the sequence to itself, and any parallel diagonal lines
of dots represent repeats.

>I have about 50 sequences of 1000+ np. They form several families of
>sequences, so I suppose each family represents some complex repetitive
>structure. I want to look for direct and inverted repeats in the sequences.
>Is there an easy to do this?

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